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Practical Course
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Currently viewing: 18 March - 7 April| 2007 |Institut Pasteur Tunis | Tunisia

Programme (latest)

Day
Date
8H-9H45
10H15-12H
14H-15H45
16H15-18H30
Sunday
March 18
Installation in Hotel
Installation in Hotel
Monday
March 19
Welcome
Alia Benkahla
Course introduction
Fredj Tekaia
Students introduction
Molecular Biology story from DNA "the queen molecule" to the small RNA world
Odile Ozier-Kalogeropoulos
Institut Pasteur Paris
UniProtKB/Swiss-Prot and ExPASy: Protein sequence databases and proteomics tools developed at the Swiss Institute of Bioinformatics
Andrea Auchincloss
SIB
UniProtKB/Swiss-Prot and ExPASy: Protein sequence databases and proteomics tools developed at the Swiss Institute of Bioinformatics
Andrea Auchincloss
SIB
Tuesday
March 20
Genome databases and open access bibliographic resources
Sonia Abdelhak (IPT)
Ahmed Rebai (CBS)
Main algorithms with applications in Bioinformatics
Gregory Nuel
Lab. Stat & Genome, Evry
Main algorithms with applications in Bioinformatic
Gregory Nuel
Lab. Stat & Genome, Evry
Main algorithms with applications in Bioinformatic
Gregory Nuel
Lab. Stat & Genome, Evry
Wednesday
March 21
Practical LINUX
Heikki Lehvaslaiho
SANBI, U. Western Cape, SA
Practical LINUX
Heikki Lehvaslaiho
SANBI, U. Western Cape, SA
Practical LINUX
Heikki Lehvaslaiho
SANBI, U. Western Cape, SA
Practical LINUX
Heikki Lehvaslaiho
SANBI, U. Western Cape, SA
Thursday
March 22
Practical Perl
Heikki Lehvaslaiho
SANBI, U. Western Cape, SA
Practical Perl
Heikki Lehvaslaiho
SANBI, U. Western Cape, SA
Practical Perl
Heikki Lehvaslaiho
SANBI, U. Western Cape, SA
Practical Perl
Heikki Lehvaslaiho
SANBI, U. Western Cape, SA
Friday
March 23
Multivariate Statistical Analysis Methods
Ahmed Rebai
CBS
Multivariate Statistical Analysis Methods
Ahmed Rebai
CBS
R statistical Package
Ahmed Rebai
CBS
R statistical Package
Ahmed Rebai
CBS
Saturday
March 24
Sequence comparisons: Similarity scores - substitution matrices
David Ardell
LCB, Uppsala
BLAST - SW - HMM similarity search algorithms and programs
David Ardell
LCB, Uppsala
Social and cultural activities
Social and cultural activities
Sunday
March 25
Social and cultural activities
C
Day
Date
8H-9H45
10H15-12H
14H-15H45
16H15-18H30
Monday
March 26
Practical: genomes comparisons
David Ardell
LCB, Uppsala
Practical: genomes comparisons
David Ardell
LCB, Uppsala
Practical: genomes comparisons
David Ardell
LCB, Uppsala
Practical: genomes comparisons
David Ardell
LCB, Uppsala
Tuesday
March 27
Multiple Alignment
Burkhard Morgenstern
Bioinformatics, Univ Gottingen
Multiple Alignment
Burkhard Morgenstern
Bioinformatics, Univ Gottingen
Motif search
Burkhard Morgenstern
Bioinformatics, Univ Gottingen
Motif search
Burkhard Morgenstern
Bioinformatics, Univ Gottingen
Wednesday
March 28
Phylogenetic Analysis Methods
Fredj Tekaia
Institut Pasteur Paris
Practical-Phylogeny
Fredj Tekaia
Institut Pasteur Paris
Molecular Evolution Methods
Fredj Tekaia
Institut Pasteur Paris
Practical Mol. evol.
Fredj Tekaia
Institut Pasteur Paris
Thursday
March 29
Clustering of paralogs - orthologs
Stijn van Dongen
Sanger Institute
Clustering of paralogs - orthologs
Stijn van Dongen
Sanger Institute
Gene prediction Methods and Programs
Alia Benkahla
Institut Pasteur Tunis
Gene Prediction Methods and Programs
Alia Benkahla
Institut Pasteur Tunis
Friday
March 30
Gene Prediction - Practical
Alia Benkahla
Institut Pasteur Tunis
In silico analysis of gene regulatory sequences.
Towards target gene identification.
Alexander Kel
BIOBASE
In silico analysis of gene regulatory sequences.
Towards target gene identification. Practical
Alexander Kel
BIOBASE
Identification of Leishmania targets for intervention and control
Ikram Guizani
Institut Pasteur Tunis
Saturday
March 31
Browsing Genomes with Ensembl
Xose Fernandez-Suarez
EBI
Browsing Genomes with Ensembl
Xose Fernandez-Suarez
EBI
Social and cultural activities
Social and cultural activities
Sunday
April 1
Social and cultural activities
Day
Date
8H-9H45
10H15-12H
14H-15H45
16H15-18H30
Monday
April 2
What have we learned from 10 years of yeast genomology
Andre Goffeau
Universite Catholique Louvain
Evolution of yeast transporters proteins
Andre Goffeau
Universite Catholique Louvain
Understanding human genome evolution through chimpanzee and mouse comparisons
Todd Taylor
RIKEN
From genes to pathways - bioinformatics and systems biology
Ralf Herwig
Max Planck Institute for Molecular Genetics, Bioinformatics, Berlin
Tuesday
April 3
Reconstructing Ancestral Vertebrate Genomes by in silico Paleogenomics
Hugues Roest Crollius
Dyogen ENS Paris
To be announced
Bridges between Biophysics and Bioinformatics: applications to Genomics
Edouard Yeramian
Institut Pasteur Paris
Anopheles gambiae A genetic Approach
Karin Eiglmeier
Institut Pasteur Paris
Wednesday
April 4
Computational tools for disease gene identification
Sonia Abdelhak
Institut Pasteur Tunis
Exploring evolutionary trends in Proteomes
Fredj Tekaia
Institut Pasteur Paris
Human population phylogenetic studies using mithochondrial DNA
Rym Kefi
Institut Pasteur Tunis
Data mining and annotation validation
Georges Cohen
Institut Pasteur Paris
Thursday
April 5
Evolutionary genomics of mycobacterial pathogens
Stewart Cole
Institut Pasteur Paris
Deep phylogenetic and phylogenomic analyses of tubercle bacilli based on the PE/PPE multigene families
Helmi Merdassi
Institut Pasteur Tunis
Genome dynamics in bacterial pathogens
Julian Parkhill
Sanger Intitute
Genome organization and evolution
Gerogio Bernardi
SZAD Napoli
Friday
April 6
RNA structure
Francois Major
U Montreal
Current hypothesis on the origin and evolution of large DNA viruses
Jean-Michel Claverie
Information Genomique et Structurale - Marseille
Comparative and functional genomics of parasites
Najib El-Sayed
U Maryland - TIGR
Open discussion on Bioinformatics and Genomics
Saturday
April 7
Course evaluation
Farewell
Sunday
April 8
Last leaving the Hotel

 

 


 

 

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