Workshop

European Molecular Biology Organization


Messenger RNA 3’ ends & gene expression

 

 

 

 

 



16 - 20 September| 2009 |Oxford| United Kingdom

Programme

Session 1: 
Transcriptional elongation and termination

D. Eick, Munich Germany
M. Hampsey, New Jersey USA

R.  Landick, Madison USA

J. Lis, Ithaca USA

E. Nudler, New York USA
D. Reinberg, New Jersey USA

   

Session 2:
Interconnections between 3’ end processing, splicing and transcription

D. Bentley, Denver USA
S.  Buratowski, Boston USA
H. Handa, Tokyo Japan
A. Kornblihtt, Buenos Aires Argentina
N. Proudfoot, Oxford UK
S. Murphy, Oxford UK

   

Session 3: 
RNA 3’ end processing: factors and mechanisms

 J. Corden, Baltimore USA

J. Greenblatt, Toronto Canada

J. Manley, New York USA
W. Marzluff, N. Carolina USA
C. Moore, Boston USA
L. Tong, New York USA
R. Anderson Madison USA

   

Session 4: 
3’ end formation and gene regulation/expression I
T. Blumenthal, Boulder USA
J. Richter, Worcester USA
J. Steitz, New Haven USA
F. Stutz, Geneva Switzerland
D. Tollervey, Edinburgh UK
C. Dean, Norwich UK

   

Session 5:
3’ end formation and gene regulation/expression II

I. Bozzoni, Rome Italy
T. Jensen, Aarhus Denmark
D. Libri, Paris France
J. Martinez, Vienna Austria

M. Wickens, Madison USA

F. Kleiman New York USA

   
   

 

 

Wednesday 16th Sept

 

pm

Arrivals

 

6.00-7.00 pm         

Reception in Old Cloisters

 

7.00-8.30 pm     

Dinner in Brasenose College Hall

 

8.30-late               

College Bar

 

 

 

 

Thursday 17th Sept

 

a

7.30-8.30 a.m

Breakfast in Brasenose College Hall

 

9.00-12.30

 Session 1:

Chair: Steve Buratowski

(Pharmacology Lecture Theatre)

 

 

Transcription elongation and termination

 

9.00 - 9.30

John Lis

 

 

Tracking transcription  

 

9.30-10.00

Danny Reinberg     

 

10.00-10.30

Shona Murphy

                  

                                   

Controlling expression of humansnRNA genes

 

10.30-11.00

Coffee break

 

11.00-11.30

Bob Landick

 

 

Role of the RNA polymerase trigger loop in transcript elongation, cleavage, and pausing

 

11.30-12.00 

Evgeny Nudler

 

              

The Mechanism of Bacterial Transcription Termination

 

12.00-12.15

David Price 

(short talk)

 

                                     

Role of GDOWN1 in controlling elongation by RNA Polymerase

 

12.15-12.30

Joanna Kufel

(short talk)

 

 

Nrd1/Nab3-dependent mechanism for Pol I transcription termination on rDNA

 

1.00-2.00 pm

Lunch in Brasenose College Hall

 

 

 Thursday pm (Pharmacology Lecture Theatre)

 

2.30-6.15

Session 2:

Chair: Jim Manley

Coupling between transcription stages and RNA processing

 

2.30-3.00

Alberto Kornblihtt

 

                                     

Chromatin, Pol II elongation and alternative splicing

 

3.00 - 3.30 David Bentley  
 

Coordination of pre-mRNA processing with RNA pol II CTD phosphorylation and transcription termination

 

3.30-4.00

Mike Hampsey

 

 

Gene Loops and RNA Polymerase II Transcription

 

4.00-4.30

Tea Break 

 

4.30-5.00

Nick Proudfoot

 

                                               

Functions for polyA site dependent gene looping                

 

5.00-5.30

Torben Jensen

 

                                     

3’end formation stimulates transcription initiation

 

5.30-6.00    

H. Handa    

 

 

Transcription elongation factors: mechanism of their action and their role in 3’ processing

 

6.00-6.15

Alexandra Moreira

(short talk) 

 

                                               

The outcome of RNA polymerase II kinetics in Polo transcription termination

 

7.00-8.30 pm

 Dinner in Brasenose College Hall

 

 8.30-10.00

 Poster Session I:  (Old Cloisters)

 

 

Bar open till late

 

 

 

 

Friday 18th Sept

 

 

7.30-8.30 am

Breakfast in Brasenose College Hall

 

9.00-12.30

Session 3:

Chair: Marv Wickens

(Pharmacology Lecture Theatre)

 

 

3’ ends and RNA turnover

 

9.00 - 9.30 Domenico Libri  

                                     

CUTs metabolism and transcription termination: stop making (anti)sense

 

9.30-10.00  

Steve Buratowski

 

                                               

Pre- and Post-transcriptional mechanisms for suppressing promiscuous   transcription

 

10.00-10.30 

 Jeff Corden 

 

                                     

Yeast RNA polymerase II non-poly(A) termination pathway: growth control and entry into stationary phase.       

 

10.30-11.00 

Coffee break 

 

11.00-11.30 

Francoise Stutz

 

                                

Antisense RNAs mediate transcriptional gene silencing in S. cerevisiae.

 

11.30-12.00 

Joan Steitz

 

12.00-12.15

Joel Neilson

(short talk)

 

             

 Deep sequencing analysis of mammalian immune cell activation suggests cell-specific programs of  3' UTR variation 

 

12.15-12.30

Christine Mayr

(short talk)

 

 

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

 

1.00-2.00 pm

Lunch in Brasenose College Hall

 

2.30-5.45

Session 4:

Chair: Joel Richter

(Pharmacology Lecture Theatre)

 

 

Factors and mechanisms

 

 

 

 

2.30-3.00

L. Tong

 

                                     

Structural and functional studies of pre-mRNA 3’-end processing

 

3.00-3.30    

Claire Moore

 

 

Assembly of an export-competent mRNP is needed for efficient release of the 3’ end processing complex

 

3.30-3.45  

Andrzej Dziembowski

(short talk)  

 

 

Different RNA pathways towards the catalytic centres of the eukaryotic exosome complex                     

 

3.45-4.00

Stepanka Vanacova

(short talk) 

 

                                     

Distinct Roles of TRAMP complexes in yeast RNA Metabolism    

 

4.00-4.30   

Tea Break

 

4.30-5.00    

Bill Marzluff & Zbig Dominski

 

5.00-5.30              

Marv Wickens      

 

5.30-5.45

Chris Norbury

(short talk) 

 

                                               

3′ uridylation promotes bulk mRNA decapping independently of deadenylation

 

7.00-8.30 pm

Dinner in Brasenose College Hall

 

 8.30-10.00 p

Poster Session II:   Old Cloisters

 

 

Bar open till late

 

     

Saturday 19th Sept

 

 

7.30-8.30 am

Breakfast in Brasenose College Hall

 

9.00-12.15

 Session 5:

Chair: Joan Steitz

(Pharmacology Lecture Theatre)

 

 

3’ ends and gene regulation I

 

9.00-9.30    

Jack Greenblatt         

 

9.30-10.00  

Irene Bozzoni

 

 

Coupling between transcription and processing promotes efficient expression of independently transcribed microRNA genes

 

10.00-10.15

Carol Lutz  

(short talk)

 

 

Cis-acting polyadenylation elements and their impact on alternative polyadenylation

 

10.15-10.30

Bin Tian

(short talk)

 

                                     

Alternative mRNA polyadenylation in development

 

 10.30-11.00  

 Coffee break

 

11.00 - 11.30 Frida Kleiman

 

The missing link: RNA 3’ end processing and DNA damage?

 

11.30-12.00 

Tom Blumenthal  

 

 

Transcription and processing of polycistronic pre-mRNAs from C. elegans operons

 

12.00 -12.15

Andre Furger

(short talk)

 

 

Splicing and alternative poly(A) site use result in a novel Melanocortin-1- receptor that contains a C-terminal tubulin beta 3 extension                  

 

1.00-2.00 pm 

Lunch in Brasenose College Hall

 

2.30-5.30

Session 6:

Chair: Nick Proudfoot    

(Pharmacology Lecture Theatre)

 

 

3’ ends and gene regulation II

 

2.30-3.00    

Dirk Eick

 

                                     

Modification and function of the carboxy-terminal domain of RNA polymerase II (CTD)

 

3.00-3.30    

Joel Richter 

 

                                     

Translational Control of Synaptic Plasticity                      

 

3.30 - 4.00 Richard Anderson  

 

A Phosphoinositide Regulated Poly(A) Polymerase Controls 3’-Processing of Select Messages          

 

 4.00-4.30

Tea Break 

 

4.30-5.00              

Caroline Dean

 

 

Targeted 3’ processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing

 

5.00-5.15

Gordon Simpson  

(short talk)   

 

 

The Spen family protein, FPA, controls RNA 3’ end formation and this can explain its role in flowering and RNA silencing

 

5.15-5.45              

Jim Manley 

 

 

Regulation of mammalian 3’ processing

 

6.30-7.00 pm

Reception in Old Cloisters

 

7.00-9.00 pm        

Banquet in Brasenose College Hall

 

9.00-late      

Bar and entertainment (Old Cloisters)

 

 

 

 

Sunday 20th September

 

 

8.00-9.00

Breakfast in Brasenose College Hall

 

am

Departures

 

 

 

 

 

 

 

 

 

European Molecular Biology Organisation (EMBO) | Meyerhofstrasse 1 | 69126 Heidelberg | Germany