Practical Course

European Molecular Biology Organization

Single molecule analysis

of DNA protein interactions

 

 

 

 

 



11 - 25 July | 2010 | Paris|France

Programme (preliminary)

 

Students will be divided into four groups of four. 

Two groups will spend the first week on magnetic trapping and the second week on optical trapping - the other two groups will

proceed in the opposite order. 

Lectures will be combined with hands-on experiments, computer exercises and demonstrations.

   
Magnetic Trapping Optical Tweezers
   

-Assembly of the prototypical magnetic trap

-Basic optics (laser safety; beam characterization; beam alignment; lenses, mirrors, telescopes, etc.)

-Preparation of DNA samples and surfaces for nanomanipulation

-Force calibrations, signal-to-noise considerations

-Hands-on experience with a functional dumbbell optical trap.

-Mechanical response of DNA to twisting and stretching

-Disassembly and reassembly of a functional dumbbell optical trap (extremely succinctly: upstream: beam characterization, alignment and steering;  beam injection; downstream: beam detection)

-Assaying DNAzymes: RNA polymerases, topoisomerases and helicases

-Demonstration of commercial instruments

-Trap characterization, signal-to-noise considerations

 

-Position-clamp mode
 

-Active force-clamp mode ;  passive force-clamp mode (to be confirmed)

 

-Assaying RNA polymerase

 

-Assaying myosin or kinesin motor proteins (to be confirmed)

 

 
   

 

European Molecular Biology Organization | Meyerhofstrasse 1 | 69117 Heidelberg | Germany